In the Picture: Medical Imaging Datasets, Artifacts, and their Living Review
- ,
- Natalia-Rozalia Avlona,
- Sarah de Boer,
- Víctor M. Campello,
- Aasa Feragen,
- Enzo Ferrante
- ,
- ,
- ,
- University of Copenhagen,
- Radboud Universiteit Nijmegen,
- University of Barcelona
Research Output:
Conference Article in Proceeding or Book/Report chapter
Article in proceedings
Peer-reviewOpen access
Publication Information
Output type
Research Output:
Conference Article in Proceeding or Book/Report chapter
Article in proceedings
Peer-reviewOriginal language
EnglishPages from-to (Number of pages)
Pages 511-531 (20 pages)Publication milestones
- Published - 23/06/2025
Publication status
Published - 23/06/2025
Place of publication
New YorkPublisher
Association for Computing Machinery, United StatesISBN (Print)
979-8-4007-1482-5Publication IDs
- ORCID: /0000-0001-7870-0603/work/186527025
- Scopus: 105010824939
Host publication title
FAccT '25: Proceedings of the 2025 ACM Conference on Fairness, Accountability, and TransparencyAbstract
Datasets play a critical role in medical imaging research, yet issues such as label quality, shortcuts, and metadata are often overlooked. This lack of attention may harm the generalizability of algorithms and, consequently, negatively impact patient outcomes. While existing medical imaging literature reviews mostly focus on machine learning (ML) methods, with only a few focusing on datasets for specific applications, these reviews remain static – they are published once and not updated thereafter. This fails to account for emerging evidence, such as biases, shortcuts, and additional annotations that other researchers may contribute after the dataset is published. We refer to these newly discovered findings of datasets as research artifacts. To address this gap, we propose a living review that continuously tracks public datasets and their associated research artifacts across multiple medical imaging applications. Our approach includes a framework for the living review to monitor data documentation artifacts, and an SQL database to visualize the citation relationships between research artifact and dataset. Lastly, we discuss key considerations for creating medical imaging datasets, review best practices for data annotation, discuss the significance of shortcuts and demographic diversity, and emphasize the importance of managing datasets throughout their entire lifecycle. Our demo is publicly available at http://inthepicture.itu.dk/.
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Citations
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Captures
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Funding Details
This project has received funding from the Independent Research Council Denmark (DFF) Inge Lehmann 1134-00017B. The “In the Picture: Medical Imaging Datasets” workshop was funded by DFF and the Danish Data Science Academy (DDSA) with Grant ID 2024-2342. We extend our gratitude to the speakers and participants of the “Datasets through the Looking-Glass” webinar, who have helped to shape this research. EF gratefully acknowledges the support of the Google Award for Inclusion Research (AIR) Program. AJS was financed by the DFF grant MMC. AH is employed at Steno Diabetes Center Aarhus that is partly funded by a donation from the Novo Nordisk Foundation. AH is supported by a Data Science Emerging Investigator grant by the Novo Nordisk Foundation (NNF22OC0076725). TR was supported by a scholarship from the Hanns Seidel Foundation with funds from the Federal Ministry of Education and Research Germany (BMBF). DW received funding from the Jill and Herbert Hunt Scholarship, University of Oxford. MAZ is funded by TRAIN (ANR-22-FAI1-0003-02). We thank Freepick for the icons in Fig. 2.
Related Event
Title
Fairness, Accountability and Transparency
Event type
ConferenceDate
23/06/2025 - 26/06/2025Location
GreeceAthensGreece
