In the Picture: Medical Imaging Datasets, Artifacts, and their Living Review
- ,
- Natalia-Rozalia Avlona,
- Sarah de Boer,
- Víctor M. Campello,
- Aasa Feragen,
- Enzo Ferrante
- ,
- ,
- ,
- Københavns Universitet,
- Radboud Universiteit Nijmegen,
- University of Barcelona
Publikation:
Konference artikel i Proceeding eller bog/rapport kapitel
Konferencebidrag i proceedings
Forskning
Peer-reviewOpen Access
Resume
Datasets play a critical role in medical imaging research, yet issues such as label quality, shortcuts, and metadata are often overlooked. This lack of attention may harm the generalizability of algorithms and, consequently, negatively impact patient outcomes. While existing medical imaging literature reviews mostly focus on machine learning (ML) methods, with only a few focusing on datasets for specific applications, these reviews remain static – they are published once and not updated thereafter. This fails to account for emerging evidence, such as biases, shortcuts, and additional annotations that other researchers may contribute after the dataset is published. We refer to these newly discovered findings of datasets as research artifacts. To address this gap, we propose a living review that continuously tracks public datasets and their associated research artifacts across multiple medical imaging applications. Our approach includes a framework for the living review to monitor data documentation artifacts, and an SQL database to visualize the citation relationships between research artifact and dataset. Lastly, we discuss key considerations for creating medical imaging datasets, review best practices for data annotation, discuss the significance of shortcuts and demographic diversity, and emphasize the importance of managing datasets throughout their entire lifecycle. Our demo is publicly available at http://inthepicture.itu.dk/.
Publikation information
Produktionstype
Publikation:
Konference artikel i Proceeding eller bog/rapport kapitel
Konferencebidrag i proceedings
Forskning
Peer-reviewOriginalsprog
EngelskSider fra-til (Antal sider)
Sider 511-531 (20 sider)Publikationsmilepæle
- Udgivet - 23/06/2025
Publikationsstatus
Udgivet - 23/06/2025
Udgivelsessted
New YorkForlag
Association for Computing Machinery, USAISBN (Trykt)
979-8-4007-1482-5Publication IDs
- ORCID: /0000-0001-7870-0603/work/186527025
- Scopus: 105010824939
Titel på værtspublikation
FAccT '25: Proceedings of the 2025 ACM Conference on Fairness, Accountability, and TransparencyMetrikker
PlumX, åbner i en ny fane
Hentninger
33
Antal citationer
22
Finansiering
This project has received funding from the Independent Research Council Denmark (DFF) Inge Lehmann 1134-00017B. The “In the Picture: Medical Imaging Datasets” workshop was funded by DFF and the Danish Data Science Academy (DDSA) with Grant ID 2024-2342. We extend our gratitude to the speakers and participants of the “Datasets through the Looking-Glass” webinar, who have helped to shape this research. EF gratefully acknowledges the support of the Google Award for Inclusion Research (AIR) Program. AJS was financed by the DFF grant MMC. AH is employed at Steno Diabetes Center Aarhus that is partly funded by a donation from the Novo Nordisk Foundation. AH is supported by a Data Science Emerging Investigator grant by the Novo Nordisk Foundation (NNF22OC0076725). TR was supported by a scholarship from the Hanns Seidel Foundation with funds from the Federal Ministry of Education and Research Germany (BMBF). DW received funding from the Jill and Herbert Hunt Scholarship, University of Oxford. MAZ is funded by TRAIN (ANR-22-FAI1-0003-02). We thank Freepick for the icons in Fig. 2.
Relateret event
Titel
Fairness, Accountability and Transparency
Begivenhedstype
KonferenceDato
23/06/2025 - 26/06/2025Lokation
GreeceAthensGrækenland
